PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110338.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 264aa    MW: 28241.2 Da    PI: 5.2983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110338.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021110132123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_010110338.1 110 FSCNYCQRKFYSSQALGGHQNAH 132
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-6108137No hitNo description
PROSITE profilePS5015711.427110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKATIDLEVE ASSANESDVS SHVASNVSVQ ETSAGSSNES LTNCSYLTNT AMPGQAGFEP  60
VTLDLTLSFN NDDLGARESI GLSLSSTSES SNEPSSLNTA AAAAAITRVF SCNYCQRKFY  120
SSQALGGHQN AHKRERTLAK RAMRMSIFSE KYTGLASLPL HGSSFRSLGI KAHSSMHHGL  180
VPSVRTPEMR SSARFEQGYF GVPIFLQDDE AELLWPGSFR QVAAETSNTQ PSFVLTGGSS  240
NLNFVEVTPT ADIDNSAPDL TLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110338.10.0Zinc finger protein 4
TrEMBLW9STR20.0W9STR2_9R
STRINGPOPTR_0004s08240.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-55zinc finger protein 4